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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54757053_54761314_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54757053 - 54761314
Intron Length:
4262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTCCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGCGTATTAATA
Flanking Amino Acid:
IDPTVPLEKQIWYHGAISRT
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
80
34.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
85.7
0.8
0.6
80.5
31.5
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
50.9
0.03
1.7
60.33
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012151
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012646
54739974 - 54774393
34420