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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54761487_54771053_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54761487 - 54771053
Intron Length:
9567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAATC
5'SS Class:
strong_major
3'SS Sequence:
GTGTATCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTGTGTATCT
Flanking Amino Acid:
WNKVTIPALAAQFNGSEKRQ
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
79
35.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
76.7
0.6
1
69.8
41.2
Minor 5ss
36.6
-1.5
3.3
51.4
45.5
Minor BPS
45.7
-0.2
2.5
72.42
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012151
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012646
54739974 - 54774393
34420