Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54916130_54917250_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54916130 - 54917250

Intron Length:

1121

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTACGTTTA

5'SS Class:

strong_major

3'SS Sequence:

CTGTTCTGACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTCAA

U12 Branch Point Sequence:

TCTGTTCTGACT

Flanking Amino Acid:

NISRETNGSLVSVYAIPQHI

Intron Amino Acid Position:

378

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

34.4

Major BPS

0.57

1.2

77.7

37.1

Major PPT

64.3

0.32

59.1

41.8

Minor 5ss

42.8

-0.8

54.9

44.6

Minor BPS

49.7

0.06

1.8

70.55

41.2

Associated Gene:

Gene:

LNPEP

Ensembl Gene ID:

ENSAPLG00000014098

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019492

54901858 - 54937326

35469

ENSAPLT00000014725

54881038 - 54937326

56289