Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54962758_54963491_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54962758 - 54963491

Intron Length:

734

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGACAG

5'SS Class:

strong_major

3'SS Sequence:

TCCTGAATAATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

CTTTCCTGAATA

Flanking Amino Acid:

ALRETKCSRQEVISYYSQYS

Intron Amino Acid Position:

182

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

64.3

41.7

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

0.25

55.6

Minor 5ss

37.4

-1.4

46.9

48.4

Minor BPS

74.6

0.77

1.4

80.19

Associated Gene:

Gene:

LIX1

Ensembl Gene ID:

ENSAPLG00000009297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009686

54962473 - 54980972

18500