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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_54969012_54978651_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54969012 - 54978651
Intron Length:
9640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTATTTATGT
Flanking Amino Acid:
PGGSCFGNFQSCLSRAEARR
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.6
0.76
0.8
80.8
36.8
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
48.1
-0
2
68.35
42.4

Associated Gene:

Gene:
LIX1
Ensembl Gene ID:
ENSAPLG00000009297
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009686
54962473 - 54980972
18500