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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55171350_55181296_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55171350 - 55181296
Intron Length:
9947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
PGSSATATNKITIIFKSYQD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.8
0.65
0.7
69.6
31.2
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
RGMB
Ensembl Gene ID:
ENSAPLG00000011165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011613
55170773 - 55181965
11193