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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55207786_55209475_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55207786 - 55209475
Intron Length:
1690

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TATGTAAGAACT
Flanking Amino Acid:
TNPEQIKQWRKNLWIFVSKF
Intron Amino Acid Position:
1508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
85.5
0.8
0.7
84.4
23.4
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
45.3
-0.2
2
68.2
41.9

Associated Gene:

Gene:
CHD1
Ensembl Gene ID:
ENSAPLG00000009965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010493
55204845 - 55239642
34798
ENSAPLT00000005371
55204845 - 55239636
34792