Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55211103_55211522_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55211103 - 55211522

Intron Length:

420

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTAGG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTGTTCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAA

U12 Branch Point Sequence:

ATATACTCAAAC

Flanking Amino Acid:

QKEKEVKEEKVNEIKSENKE

Intron Amino Acid Position:

1402

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

1.1

72.7

44.5

Major BPS

77.9

0.69

0.8

77.9

25.8

Major PPT

78.9

0.65

0.8

77.6

36.1

Minor 5ss

40.7

-1

2.6

51.6

44.9

Minor BPS

51.8

0.04

1.8

65.11

39.3

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005371

55204845 - 55239636

34792