Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55215745_55216508_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55215745 - 55216508

Intron Length:

764

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTATTTCTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TGTAATTTATTT

Flanking Amino Acid:

SIPSDPEERKRYVIPCHTKA

Intron Amino Acid Position:

1176

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

82.4

30.8

Major BPS

84.4

0.85

1.1

34.5

Major PPT

76.5

0.6

0.9

36.2

Minor 5ss

58.1

0.27

2.3

39.6

Minor BPS

49.9

0.07

1.8

70.36

40.8

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005371

55204845 - 55239636

34792

ENSAPLT00000010493

55204845 - 55239642

34798