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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55219853_55220799_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
55219853 - 55220799
Intron Length:
947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGATC
5'SS Class:
major
3'SS Sequence:
TCTGATGTATAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AAGTGATGAAAA
Flanking Amino Acid:
VGDELLSQFKVANFSNMDED
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
71.4
38.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
57
0.16
1.2
60.9
43.6
Minor 5ss
43
-0.8
3.1
60.3
44.4
Minor BPS
42
-0.6
2
50.82
39.7

Associated Gene:

Gene:
CHD1
Ensembl Gene ID:
ENSAPLG00000009965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010493
55204845 - 55239642
34798
ENSAPLT00000005371
55204845 - 55239636
34792