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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55222197_55223495_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55222197 - 55223495
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTATATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTATAT
Flanking Amino Acid:
LDHFNAEGSEDFCFLLSTRA
Intron Amino Acid Position:
796

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
100
1.24
0.5
100
0
Major PPT
87.9
0.85
0.8
85.5
33.8
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
49.8
0.06
1.7
69.01
42.2

Associated Gene:

Gene:
CHD1
Ensembl Gene ID:
ENSAPLG00000009965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010493
55204845 - 55239642
34798
ENSAPLT00000005371
55204845 - 55239636
34792