Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55225650_55225963_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55225650 - 55225963

Intron Length:

314

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAACTATT

5'SS Class:

major

3'SS Sequence:

TCTTATGTCATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTTAC

U12 Branch Point Sequence:

GGTTATTTACAC

Flanking Amino Acid:

EMSALQKQYYKWILTRNYKA

Intron Amino Acid Position:

688

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

1.1

84.6

33.2

Major BPS

78.8

0.71

0.9

69.7

37.1

Major PPT

73.4

0.53

0.9

68.3

37.2

Minor 5ss

48.9

-0.1

2.6

69.2

34.9

Minor BPS

47.4

-0.2

1.8

58.23

40.1

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010493

55204845 - 55239642

34798

ENSAPLT00000005371

55204845 - 55239636

34792