Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55226153_55226995_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55226153 - 55226995

Intron Length:

843

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGAAG

5'SS Class:

major

3'SS Sequence:

TTTTGTATTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TACTATTTTACA

Flanking Amino Acid:

WSLLHFIMPEKFSSWEDFEE

Intron Amino Acid Position:

625

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.7

72.4

38.9

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

82.8

0.74

0.8

78.4

34.8

Minor 5ss

33.3

-1.9

3.2

39.9

40.1

Minor BPS

52.8

0.08

1.8

65.06

41.5

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010493

55204845 - 55239642

34798

ENSAPLT00000005371

55204845 - 55239636

34792