About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55228920_55229459_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55228920 - 55229459
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCTTTTTTGTTT
Flanking Amino Acid:
GLNWLAHSWCKGNSCILADE
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
89.9
22.1
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.8
0.87
0.7
88.9
28.2
Minor 5ss
41
-1
2.8
51.7
39.1
Minor BPS
44.4
-0.3
3.4
73.17
39

Associated Gene:

Gene:
CHD1
Ensembl Gene ID:
ENSAPLG00000009965
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005371
55204845 - 55239636
34792
ENSAPLT00000010493
55204845 - 55239642
34798