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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55232042_55232087_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

55232042 - 55232087

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTTAAAGGA

5'SS Class:

weak_major

3'SS Sequence:

AAAAAAAGATCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAAAAAA

U12 Branch Point Sequence:

ACTACAAGAAAA

Flanking Amino Acid:

ETEETLKQQNETKRWLKNAS

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

56.1

0.14

1.2

53.5

37.6

Major BPS

47.9

-0.1

0.9

51.7

28.4

Major PPT

46.3

-0.2

1.1

35.2

43.3

Minor 5ss

27.9

-2.5

3.3

35.2

41.3

Minor BPS

41.2

-0.6

1.9

51.67

38.7

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010493

55204845 - 55239642

34798

ENSAPLT00000005371

55204845 - 55239636

34792