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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55232255_55233732_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55232255 - 55233732

Intron Length:

1478

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATTTTT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

GCACACTTAATT

Flanking Amino Acid:

FMDSRVGRKGATGAATTIYA

Intron Amino Acid Position:

263

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

89.8

23.7

Major BPS

78.2

0.7

77.9

32.1

Major PPT

90.3

0.91

0.7

88.4

28.7

Minor 5ss

46.2

-0.4

2.8

67.4

43.6

Minor BPS

58.5

0.35

1.5

68.42

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010493

55204845 - 55239642

34798

ENSAPLT00000005371

55204845 - 55239636

34792