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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55238405_55239441_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55238405 - 55239441

Intron Length:

1037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAACAA

5'SS Class:

strong_major

3'SS Sequence:

AATTCCTACTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTCAA

U12 Branch Point Sequence:

GTATGTTTAACT

Flanking Amino Acid:

AKPPKVDGTEFWKSSPSILA

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

70.2

35.7

Major BPS

76.9

0.67

0.8

77.7

26.1

Major PPT

69.9

0.45

0.9

38.5

Minor 5ss

30.6

-2.2

3.1

38.6

46.4

Minor BPS

67.2

0.62

1.8

81.48

40.1

Associated Gene:

Gene:

CHD1

Ensembl Gene ID:

ENSAPLG00000009965

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010493

55204845 - 55239642

34798

ENSAPLT00000005371

55204845 - 55239636

34792