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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55719475_55720254_R

Intron Information:

Intron Rank:
143045
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
55719475 - 55720254
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGCTTG
5'SS Class:
weak_major
3'SS Sequence:
TTTGTCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATTATTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
62.3
44.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
88
0.85
0.7
85.4
29.3
Minor 5ss
60.9
0.37
2.3
64.3
47.1
Minor BPS
66.3
0.59
1.4
80.02
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024310
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036573
55719208 - 55725904
6697
ENSAPLT00000029441
55719208 - 55725904
6697