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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_55976837_55986549_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55976837 - 55986549
Intron Length:
9713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCCATTGATT
Flanking Amino Acid:
KEIDSHDFVIRCNLAPVVEF
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
100
1.24
0.5
100
0
Major PPT
87.2
0.84
0.6
85
22.6
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
67.9
0.64
1.6
86.17
33.1

Associated Gene:

Gene:
ST8SIA4
Ensembl Gene ID:
ENSAPLG00000003725
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003815
55976539 - 56001692
25154