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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56425509_56426630_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56425509 - 56426630
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGACTT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AACATTTCAACA
Flanking Amino Acid:
GVQSVFLRLLGTIPGPILFG
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
77.2
37.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.3
0.61
0.8
76.2
32.4
Minor 5ss
44
-0.7
3.1
65.1
46.1
Minor BPS
49
-0
1.5
55.43
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009323
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009739
56423962 - 56454992
31031