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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56438178_56439031_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56438178 - 56439031
Intron Length:
854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAAT
5'SS Class:
strong_major
3'SS Sequence:
TGCACTTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTGTCAATAAAT
Flanking Amino Acid:
PFSCFPKYLPGTAKIQAEKI
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
89.4
23.3
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.5
0.55
0.9
69.1
36.8
Minor 5ss
36.8
-1.5
2.9
50.6
45.9
Minor BPS
55.8
0.26
2
79.94
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009323
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009739
56423962 - 56454992
31031