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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56439154_56439794_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56439154 - 56439794
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TCTTTGCAAATT
Flanking Amino Acid:
NVYIDIQIPESTQIDQDDPR
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.7
0.8
0.8
77.5
41
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
43.3
-0.4
2.5
67.26
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009323
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009739
56423962 - 56454992
31031