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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56472148_56472474_F

Intron Information:

Intron Rank:
128513
Intron Class:
major
Intron Phase:
Intron Coordinates:
56472148 - 56472474
Intron Length:
327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
TCTTCCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTTCCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.3
74.4
41.9
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
89.1
0.88
0.6
83.6
24.8
Minor 5ss
42.7
-0.8
2.6
52.1
44.5
Minor BPS
77.4
0.86
1.5
83.52
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033592
56472026 - 56474361
2336
ENSAPLT00000023049
56472026 - 56474361
2336