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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56472588_56473776_F

Intron Information:

Intron Rank:
128514
Intron Class:
major
Intron Phase:
Intron Coordinates:
56472588 - 56473776
Intron Length:
1189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCTAC
U12 Branch Point Sequence:
TCTGCTGCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
44.6
-0.3
1.3
39.5
40.5
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
41.6
-0.5
2.4
63.46
47

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019219
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033592
56472026 - 56474361
2336
ENSAPLT00000023049
56472026 - 56474361
2336