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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56602833_56611848_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56602833 - 56611848

Intron Length:

9016

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTGAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TCTCTTTGAACA

Flanking Amino Acid:

IRMPGVTPKQSDTYLCMSVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

82.1

24.6

Major BPS

100

1.24

0.5

100

Major PPT

75.2

0.57

72.6

36.4

Minor 5ss

27.3

-2.6

2.7

30.6

42.8

Minor BPS

60.7

0.33

1.4

37.4

Associated Gene:

Gene:

PAM

Ensembl Gene ID:

ENSAPLG00000009549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028082

56601152 - 56685048

83897

ENSAPLT00000010027

56601152 - 56698009

96858