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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56611907_56621323_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56611907 - 56621323

Intron Length:

9417

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TATTTTTTATTT

Flanking Amino Acid:

PLPVDDEAYVVDFKPHASMD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

100

1.18

0.6

100

Major BPS

96.5

1.15

0.6

34.2

Major PPT

93.6

0.98

0.7

92.3

26.6

Minor 5ss

41.7

-0.9

2.9

59.7

44.8

Minor BPS

65.4

0.56

1.5

80.16

36.3

Associated Gene:

Gene:

PAM

Ensembl Gene ID:

ENSAPLG00000009549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010027

56601152 - 56698009

96858

ENSAPLT00000028082

56601152 - 56685048

83897