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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56621412_56627768_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56621412 - 56627768

Intron Length:

6357

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCATGTTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

CTTTTTTCATGT

Flanking Amino Acid:

CNEPSSTENYWDCDEGTCKD

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

76.9

31.6

Major BPS

100

1.24

0.5

100

Major PPT

77.9

0.63

0.9

72.9

37.3

Minor 5ss

32.2

-2

3.5

44.1

44.7

Minor BPS

46.2

-0.2

66.8

44.7

Associated Gene:

Gene:

PAM

Ensembl Gene ID:

ENSAPLG00000009549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028082

56601152 - 56685048

83897

ENSAPLT00000010027

56601152 - 56698009

96858