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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56640294_56640593_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56640294 - 56640593

Intron Length:

300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTTGT

5'SS Class:

major

3'SS Sequence:

TCCTCTCTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TACTAAT

U12 Branch Point Sequence:

CTTTTACTAATT

Flanking Amino Acid:

IGRQSPQLPQAFYPVEHPVD

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

1.2

70.9

41.9

Major BPS

86.7

0.91

0.7

84.2

21.8

Major PPT

86.2

0.81

0.7

84.1

23.9

Minor 5ss

36.9

-1.5

3.1

50.4

45.9

Minor BPS

54.3

0.21

1.9

77.25

39.5

Associated Gene:

Gene:

PAM

Ensembl Gene ID:

ENSAPLG00000009549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028082

56601152 - 56685048

83897

ENSAPLT00000010027

56601152 - 56698009

96858