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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56676919_56679424_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56676919 - 56679424

Intron Length:

2506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGAGTAT

5'SS Class:

major

3'SS Sequence:

CTTTTCTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTAAT

U12 Branch Point Sequence:

CTTTTCTTCACA

Flanking Amino Acid:

IIDTFIPLRKSFEMPHDIVA

Intron Amino Acid Position:

772

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

38.3

Major BPS

67.8

0.44

1.1

67.7

36.5

Major PPT

87.9

0.85

0.7

83.3

25.1

Minor 5ss

36.4

-1.5

3.7

54.5

49.7

Minor BPS

68.5

0.58

1.7

78.35

38.8

Associated Gene:

Gene:

PAM

Ensembl Gene ID:

ENSAPLG00000009549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028082

56601152 - 56685048

83897

ENSAPLT00000010027

56601152 - 56698009

96858