Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56680933_56682642_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56680933 - 56682642

Intron Length:

1710

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTCTA

5'SS Class:

strong_major

3'SS Sequence:

CTTCTTTTTAAAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAAAT

U12 Branch Point Sequence:

TTCTTTTTAAAG

Flanking Amino Acid:

KAGIEVQEIKESETVVEARL

Intron Amino Acid Position:

823

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.9

0.8

1.1

79.2

36.3

Major BPS

82.3

0.8

0.9

87.6

25.7

Major PPT

0.68

81.5

27.8

Minor 5ss

34.2

-1.8

2.8

44.5

Minor BPS

65.8

0.36

1.5

67.62

40.4

Associated Gene:

Gene:

PAM

Ensembl Gene ID:

ENSAPLG00000009549

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028082

56601152 - 56685048

83897

ENSAPLT00000010027

56601152 - 56698009

96858