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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56696441_56698894_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56696441 - 56698894
Intron Length:
2454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATACG
5'SS Class:
major
3'SS Sequence:
TTTTATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTACTTTAATG
Flanking Amino Acid:
KPYIRGSNEKDNHYFLQGAV
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
70.4
39.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
92.9
0.96
0.7
88.5
28.1
Minor 5ss
41.5
-0.9
2.6
51.8
44.8
Minor BPS
68.7
0.45
1.4
67.54
40.8

Associated Gene:

Gene:
GIN1
Ensembl Gene ID:
ENSAPLG00000010085
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010513
56696028 - 56703399
7372