Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56701002_56702108_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56701002 - 56702108

Intron Length:

1107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTATGGTTT

5'SS Class:

major

3'SS Sequence:

GTTTCTGCACTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTATTGATA

Flanking Amino Acid:

TSITNDVKQWVYACQHCQVA

Intron Amino Acid Position:

112

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.1

0.59

72.1

39.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

66.4

0.37

59.8

41.6

Minor 5ss

48.3

-0.1

3.1

64.2

47.3

Minor BPS

66.4

0.51

1.5

78.83

30.7

Associated Gene:

Gene:

GIN1

Ensembl Gene ID:

ENSAPLG00000010085

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010513

56696028 - 56703399

7372