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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56702303_56703253_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56702303 - 56703253
Intron Length:
951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TCATGTATAACT
Flanking Amino Acid:
RRAAKKFVFKENKLFYVGKD
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
78.6
35.9
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
89.5
0.89
0.7
81.7
35.4
Minor 5ss
43.3
-0.7
3
60.2
44.5
Minor BPS
52
0.14
2
73.34
43.6

Associated Gene:

Gene:
GIN1
Ensembl Gene ID:
ENSAPLG00000010085
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010513
56696028 - 56703399
7372