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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56725218_56726947_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56725218 - 56726947
Intron Length:
1730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTAAAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTTTCCTTAAAA
Flanking Amino Acid:
IAWKVCLAFKQTVCGFDLLR
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
68.9
43.8
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
64.3
0.32
1
59.7
38.7
Minor 5ss
37.2
-1.4
3
48
47.5
Minor BPS
88
1.19
1.1
93.09
25.3

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010640
56714832 - 56757465
42634
ENSAPLT00000038446
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000022617
56714832 - 56757465
42634
ENSAPLT00000021806
56714832 - 56757465
42634
ENSAPLT00000018753
56714832 - 56757465
42634