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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56730041_56731085_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56730041 - 56731085
Intron Length:
1045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TCCTCTCTCACT
Flanking Amino Acid:
KLEQLKTVLEMYGHFSGINR
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
72.7
0.56
1
75
30.1
Major PPT
83.8
0.76
0.8
81.1
30.9
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
49.9
0.08
2.1
71.75
45.6

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010640
56714832 - 56757465
42634
ENSAPLT00000038446
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000022617
56714832 - 56757465
42634
ENSAPLT00000021806
56714832 - 56757465
42634
ENSAPLT00000018753
56714832 - 56757465
42634