About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56735320_56737225_F


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
56735320 - 56737225

Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTTAGAATA

5'SS Class:
strong_major

3'SS Sequence:
TCTCAAATTGCAG|C

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTTTGAA

U12 Branch Point Sequence:
TTTATCTCAAAT

Flanking Amino Acid:
REFTADDYDKLTPSGSISLI

Intron Amino Acid Position:
651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
81.7
0.75
1.1
82
30.9

Major BPS
87.2
0.92
0.8
77.7
37.1

Major PPT
74.2
0.54
0.9
66.8
37.9

Minor 5ss
33.4
-1.9
2.9
41
44.9

Minor BPS
62.6
0.48
1.7
82.36
38.4

Associated Gene:

Gene:
PPIP5K2

Ensembl Gene ID:

Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

56714832 - 56757465
42634

56714832 - 56757465
42634

56714832 - 56750912
36081

56714832 - 56757465
42634

56714832 - 56757465
42634

56714832 - 56757465
42634