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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56737368_56738338_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56737368 - 56738338
Intron Length:
971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TGTATTTATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GATTACTTACAT
Flanking Amino Acid:
RQRMEDPKSADIQLYHSETL
Intron Amino Acid Position:
698

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.9
0.63
1
70.1
44.8
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
53
0.17
1.9
72.76
43.1

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010640
56714832 - 56757465
42634
ENSAPLT00000038446
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000022617
56714832 - 56757465
42634
ENSAPLT00000021806
56714832 - 56757465
42634
ENSAPLT00000018753
56714832 - 56757465
42634