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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56738563_56739407_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56738563 - 56739407
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTACGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAA
Flanking Amino Acid:
KALADIVIPQEYGISKSEKL
Intron Amino Acid Position:
773

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.3
0.68
0.8
76.8
30.6
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
65.2
0.47
1.3
69.89
35.8

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010640
56714832 - 56757465
42634
ENSAPLT00000038446
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000022617
56714832 - 56757465
42634
ENSAPLT00000021806
56714832 - 56757465
42634
ENSAPLT00000018753
56714832 - 56757465
42634