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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56739846_56741136_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56739846 - 56741136
Intron Length:
1291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTCATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTCTCTTCATA
Flanking Amino Acid:
STLRYGALCDESKDEQWKRA
Intron Amino Acid Position:
854

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
77
34.4
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
70.1
0.45
1
76.6
31
Minor 5ss
42
-0.9
2.8
53.8
43.7
Minor BPS
62.9
0.4
1.7
76.1
35.4

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010640
56714832 - 56757465
42634
ENSAPLT00000038446
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000022617
56714832 - 56757465
42634
ENSAPLT00000021806
56714832 - 56757465
42634
ENSAPLT00000018753
56714832 - 56757465
42634