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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56742306_56744669_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56742306 - 56744669
Intron Length:
2364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCACTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CCTTTCTCACTT
Flanking Amino Acid:
PRSRKIGSVEEESPLSVSSP
Intron Amino Acid Position:
987

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
82.6
0.73
0.8
73.9
35.7
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
49.4
0.04
1.8
66.82
44.9

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010640
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000038446
56714832 - 56757465
42634
ENSAPLT00000022617
56714832 - 56757465
42634
ENSAPLT00000018753
56714832 - 56757465
42634