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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56748281_56749153_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56748281 - 56749153
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGCA
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAT
U12 Branch Point Sequence:
TTTCAGGTACCT
Flanking Amino Acid:
KKLTSSGFIDDTTRGSAVKR
Intron Amino Acid Position:
1108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
69.5
34.8
Major BPS
69.5
0.48
1
73.5
28.6
Major PPT
84.1
0.77
0.6
84.3
23.6
Minor 5ss
39.2
-1.2
3
46.9
43.8
Minor BPS
40.4
-0.6
2.8
70.09
46.4

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021806
56714832 - 56757465
42634
ENSAPLT00000010637
56714832 - 56750912
36081
ENSAPLT00000038446
56714832 - 56757465
42634