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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56749217_56750757_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56749217 - 56750757
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TAACTCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
ATTATCATACCT
Flanking Amino Acid:
SISFARHPTNDSPLPCHL*
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
80.7
34.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.7
0.56
0.9
70.9
39.1
Minor 5ss
45.2
-0.5
3.1
63.7
43
Minor BPS
51.5
0.12
1.9
75.82
40.6

Associated Gene:

Gene:
PPIP5K2
Ensembl Gene ID:
ENSAPLG00000010179
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010637
56714832 - 56750912
36081