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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56823218_56823972_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56823218 - 56823972
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCAA
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TAACACTGATCA
Flanking Amino Acid:
LCAENVNENKRWITALKASI
Intron Amino Acid Position:
1268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
67.5
39.6
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
83.5
0.75
0.7
76.8
31.9
Minor 5ss
36.5
-1.5
3.1
47
48.3
Minor BPS
46.2
-0.2
1.8
57.74
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010867
56822941 - 56868085
45145