Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56827174_56830279_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56827174 - 56830279

Intron Length:

3106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGCTT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTCTTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

CTTACCACAACT

Flanking Amino Acid:

MEKAVHPVHQNHVWVDVTLH

Intron Amino Acid Position:

1161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.6

0.72

75.3

40.4

Major BPS

84.4

0.85

34.5

Major PPT

85.8

0.81

0.8

79.7

32.4

Minor 5ss

36.8

-1.5

3.5

56.4

47.8

Minor BPS

56.1

0.27

1.9

78.41

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010441

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010867

56822941 - 56868085

45145