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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56830323_56831832_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56830323 - 56831832
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
GGTCATTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
TTTTGGTCATTT
Flanking Amino Acid:
FCATSNQEMKRWLEAMEKAV
Intron Amino Acid Position:
1146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
71.9
0.49
0.9
65
41
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
43
-0.4
2.6
71.65
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010867
56822941 - 56868085
45145