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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56845387_56846770_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56845387 - 56846770
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTAATACTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTATAT
Flanking Amino Acid:
HSEAANLARKGPDILTMVVG
Intron Amino Acid Position:
1034

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.7
1.1
0.7
87.9
29.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
67.9
0.4
1
64.1
42.2
Minor 5ss
43.8
-0.7
2.8
57.8
46.8
Minor BPS
56.7
0.29
1.9
80.32
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010867
56822941 - 56868085
45145