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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56846882_56850428_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56846882 - 56850428
Intron Length:
3547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTACTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTACATTAAGT
Flanking Amino Acid:
KPILVTEVDTNSAAEEAGLQ
Intron Amino Acid Position:
997

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
89.5
0.89
0.7
82.5
34
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
58.8
0.35
2
79.12
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010867
56822941 - 56868085
45145