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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56852482_56861795_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56852482 - 56861795
Intron Length:
9314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCATGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
SITSTITEGSVNSEDARSVD
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.7
1.05
0.6
92.2
16.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
70.4
0.46
1
65.9
39.1
Minor 5ss
33.9
-1.8
2.8
41.8
44.8
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010441
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010867
56822941 - 56868085
45145