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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56885458_56886379_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56885458 - 56886379
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TATTCTTTAAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTCTTTAAAA
Flanking Amino Acid:
ALLQLTEKEAGVVAQARSVL
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.6
0.44
1.1
72.1
36.7
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
77.6
0.86
1.2
82.02
32.3

Associated Gene:

Gene:
NUDT12
Ensembl Gene ID:
ENSAPLG00000010451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010883
56879751 - 56889742
9992