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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_56886976_56889528_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56886976 - 56889528
Intron Length:
2553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTATGCTGATAG
Flanking Amino Acid:
FDVVRILLEEGCDRSIVNKS
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
81.5
0.71
0.8
77.3
31.5
Minor 5ss
45.1
-0.5
2.9
56.3
47.9
Minor BPS
44.1
-0.5
2.2
54.65
45.7

Associated Gene:

Gene:
NUDT12
Ensembl Gene ID:
ENSAPLG00000010451
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010883
56879751 - 56889742
9992